Peer-reviewed journal work.

Farhat, S., Bolster, D., & Battiato, I. (2026). Hot-spot index: A general framework for quantifying reactive hotspots. Advances in Water Resources, 105359. Paper

Menicali, L., Bolster, D., Richter, D. H., Jane, S. F., Jones, S., & Castruccio, S. (2026). A spatiotemporal physics-motivated state-space model of lake temperature profiles. Environmental Science & Technology, 60(21), 15089-15100. Paper

Gonzalez, C., Richter, D. H., Bolster, D., Calantoni, J., Escauriaza, C., & Schmeeckle, M. W. (2026). Diffusive behavior and statistical evolution of sediment transport from DNS-DEM and stochastic models. Water Resources Research, 62(5), e2025WR040616. Paper

Aboelnour, M. A., & Bolster, D. (2026). Mapping tomorrow’s flood: a probabilistic, equity-centered risk assessment for the Indianapolis Metropolitan Area. Natural Hazards, 122(7), 299. Paper

Farhat, S., Sole-Mari, G., & Bolster, D. (2026). Non-monotonic dependence of mixing on phase saturation in 3D porous media. Geophysical Research Letters, 53(6), e2025GL119980. Paper

Hu, M., Tank, J. L., Bolster, D., Hardy, A., Peters, B., Hartley, S., & Kapp, P. (2026). Studio as a climate laboratory for integrating environmental science and adaptive reuse in architectural education. Discover Sustainability. Paper

Farhat, S., Sole-Mari, G., & Bolster, D. (2026). Role of dead-end regions and transmitting pores in mixing and reactivity in unsaturated porous media. Water Resources Research, 62(2), e2025WR041699. Paper

Greaves, J., Badilla-Aguilar, A., Bolster, D., & Bibby, K. (2025). Differential impact of biofilm growth on fecal indicator fate in flowing water. ACS ES&T Water, 6(1), 377-384. Paper

Hallack, D. M. C., Bolster, D., Hyman, J. D., Sweeney, M. R., & Viswanathan, H. S. (2025). Stochastic model for mixing interface evolution through three-dimensional fracture networks. Physical Review E, 112(5), 055111. Paper

Roche, K. R., Dentz, M., Samolis, R. M., Hixson, J. L., Gonzalez-Pinzon, R., Herzog, S. P., Kim, J., Ward, A. S., & Bolster, D. (2025). Quantifying benthic biolayer contributions to whole-stream reactivity by unifying surface and subsurface observations: Field evidence and theory. Water Resources Research, 61(11), e2024WR039373. Paper

Woodruff, J., Dietrich, J. C., Wirasaet, D., Kennedy, A. B., Bolster, D., & Luettich, R. A. (2025). Resolution sensitivities for subgrid modeling of coastal flooding. Coastal Engineering, 201, 104787. Paper

Al-Zghoul, B. M., Johnson, W. P., Ullauri, L., & Bolster, D. (2025). Parameters driving anomalous transport in colloids: Dimensional analysis. Langmuir, 41(30), 19924-19938. Paper

Hallack, D. M. C., Sole-Mari, G., Farhat, S., & Bolster, D. (2025). 3D pore-scale mixing interface evolution. ARC Geophysical Research, 1(1). Paper

Al-Zghoul, B. M., Johnson, W. P., & Bolster, D. T. (2025). A paradigm shift in colloid filtration: Upscaling from grain to Darcy scale. ARC Geophysical Research, 1(1). Paper

Snyder, E. D., Tank, J. L., Pruitt, A. N., Peters, B., Brandao-Dias, P. F. P., Curtis, E. M., Greaves, J., Bolster, D., Bibby, K., & Egan, S. P. (2025). Warming increases environmental DNA (eDNA) removal rates in flowing waters. Environmental DNA, 7(3), e70094. Paper

Pankavich, S., Schauer, L., Schmidt, M. J., Engdahl, N. B., Bolster, D., & Benson, D. A. (2025). Convergence of mass transfer particle tracking schemes for the simulation of advection-diffusion-reaction equations. Applied Mathematics and Computation , 496 , 129358. Paper

Johnson, W. P., Ullauri, L. A., Al-Zghoul, B. M., & Bolster, D. (2025). Experimental Confirmation of the Interception History Paradigm for Colloid (Micro and Nanoparticle) Transport in Porous Media. Environmental Science & Technology. Paper

Sun, H., Wirasaet, D., Kennedy, A. B., Li, Y., Begmohammadi, A., & Bolster, D. (2025). Subgrid correction of storm surge modeling in orthogonal curvilinear coordinates. Environmental Modelling & Software , 189 , 106435. Paper

Cho, P. G., Falster, G., Bolster, D., Berke, M. A., & Müller, M. F. (2025). Influence of the Indian Walker Circulation on δ δ 18OP and Hydroclimate Variability in the Indian Ocean Basin. Journal of Geophysical Research: Atmospheres , 130 (8), e2025JD043840. Paper

Volponi, S. N., Pachalieva, A. A., Bolster, D., Sweeney, M. R., Stauffer, P. H., Viswanathan, H. S., & Hyman, J. D. (2025). Characterizing the impact of finite matrix block size on conservative particle transport through three-dimensional fracture networks. Journal of Hydrology , 650 , 132462. Paper

Brandão‐Dias, P. F., Snyder, E., Tank, J. L., Mahl, U. H., Peters, B., Shogren, A. J., … & Egan, S. P. (2025). Comparing the fate of edna by particle sizes and molecule lengths in recirculating streams. Environmental DNA , 7 (2), e70066. Paper

Volponi, S. N., Porta, G., Al-Zghoul, B. M., Bolster, D., & Johnson, W. P. (2025). Inferring experimental colloid removal with an inverse two-population model linking continuum scale data to nanoscale features. Advances in Water Resources , 197 , 104905. Paper

Volponi, S. N., Al-Zghoul, B. M., Porta, G., Bolster, D., & Johnson, W. P. (2025). Interception history drives colloid transport variance in porous media. Environmental Science & Technology , 59 (6), 3165-3171. Paper

Volponi, S. N., Tank, J. L., Vincent, A. E., Snyder, E. D., Pruitt, A. N., & Bolster, D. (2025). Biofilm Development, Senescence, and Benthic Substrate Influence Hyporheic Transport in Streams. Journal of Geophysical Research: Biogeosciences , 130 (2), e2024JG008225. Paper

Aboelnour, M. A., Tank, J. L., Hamlet, A. F., Bertassello, L. E., Ren, D., & Bolster, D. (2025). A SWAT model depicts the impact of land use change on hydrology, nutrient, and sediment loads in a Lake Michigan watershed. Modeling Earth Systems and Environment , 11 (1), 22. Paper

Farhat, S., Bolster, D., & Sole-Mari, G. (2025). Linking mixing interface deformation to concentration gradients in porous media. Physical Review Fluids , 10 (2), 024501. Paper

Al-Zghoul, B. M., Johnson, W. P., & Bolster, D. (2025). A training trajectory random walk model for upscaling colloid transport under favorable and unfavorable conditions. Advances in Water Resources , 196 , 104878. Paper

Aboelnour, M. A., Tank, J. L., Hamlet, A. F., Royer, T. V., & Bolster, D. (2025). A watershed model predicts the effects of cover crops on river flows, sediment transport, and nutrient loss to Lake Michigan. Journal of Great Lakes Research , 102528. Paper

Farhat, S., Sole-Mari, G., Hallack, D., & Bolster, D. (2024). Evolution of pore-scale concentration PDFs and estimation of transverse dispersion from numerical porous media column experiments. Advances in Water Resources , 191 , 104770. doi.org/. Paper

Badilla-Aguilar, A., Hallack, D. M. C., Ginn, O., Snyder, E., Bolster, D., Tank, J. L., & Bibby, K. (2024). Streambed immobilization controls the transport of antibiotic resistance genes in flowing water. Water Research , 259 , 121833. doi.org/. Paper

Begmohammadi, A., Wirasaet, D., Lin, N., Dietrich, J. C., Bolster, D., & Kennedy, A. B. (2024). Subgrid modeling for compound flooding in coastal systems. Coastal Engineering Journal , 1-18. doi.org/. Paper

Al-Zghoul, B. M., Volponi, S. N., Johnson, W. P., & Bolster, D. (2024). Effects of initial injection condition on colloid retention. Water Resources Research , 60, e2023WR036877. Paper

Mathias, S.A., Bolster, D. & Veremieiev, S. Two Film Approach to Continuum Scale Mixing and Dispersion with Equilibrium Bimolecular Reaction. Transp Porous Med (2024). Paper

L Xing, H Liu and D Bolster Statistical-physical method for simulating the transport of microplastic-antibiotic compound pollutants in a typical bay area Environmental Pollution. Paper

Zhang J, M Bonas, D Bolster, G Fuglstad and S Castruccio High Resolution Global Precipitation Downscaling with Latent Gaussian Models and Nonstationary SPDE Structure. Journal of the Royal Statistical Society: Series C. Paper

Alifa, M., Castruccio, S., Bolster, D., Bravo, M. A., & Crippa, P. (2023). Uncertainty reduction and environmental justice in air pollution epidemiology: the importance of minority representation. GeoHealth , 7 (10), e2023GH000854. Paper

Brandão-Dias, Pedro F. P., Jennifer L. Tank, Elise D. Snyder, Ursula H. Mahl, Brett Peters, Diogo Bolster, Arial J. Shogren, Gary A. Lamberti, Kyle Bibby, and Scott P. Egan. “Suspended Materials Affect Particle Size Distribution and Removal of Environmental DNA in Flowing Waters.” Environmental Science & Technology 57, no. 35 (2023): 13161-13171. Paper

Snyder, E. D., Tank, J. L., Brandão-Dias, P. F., Bibby, K., Shogren, A. J., Bivins, A. W., … & Lamberti, G. A. (2023). Environmental DNA (eDNA) removal rates in streams differ by particle size under varying substrate and light conditions. Science of The Total Environment , 903 , 166469. Paper

O Ginn, J Tank, A Badilla-Aguilar, E Snyder, P Brandao-Dias, E Thrift, D Bolster and K Bibby Persistence of antibiotic resistance genes varies with particle size and substrate conditions in recirculating streams Environmental Science & Technology. Paper

J Woodruff, JC Dietrich, D Wirasaet, AB Kennedy and D Bolster Storm Surge prediction from ocean to subgrid scales Natural Hazards. Paper

L Shang, Y Zhang, Q Ye, SL Speir, BW Peters, Y Wu, CJ Stoffel, D Bolster, JL Tank, DM Wood, N Wei and D Wang CrowdWaterSens: An Uncertainty-aware Crowdsensing Approach to Groundwater Contamination Estimation Pervasive and Mobile Computing. Paper

L Schauer, MJ Schmidt, NB Engdahlm SD Pankavich, DA Benson and D Bolster Parallelized domain decomposition for multi-dimensional Lagrangian random walk mass-transfer tracking methods Geoscientific Model Development. Paper

PFP Brandao-Dias, DMC Hallack, ED Snyder, JL Tank, D Bolster, S Volponi, AJ Shogren, GA Lamberti, K Bibby and SP Egan Particle size influences decay rates of environmental DNA in aquatic systems Molecular Ecology Resources. Paper

A Begmohammadi, D Wirasaet, A Poisson, JL Woodruff, C Dietrich, D Bolster and A Kennedy Numerical extension to incorporate subgrid corrections in an established storm surge model Coastal Engineering Journal. Paper

C Mullen, M Muller, G Penny, F Hung and D Bolster Hydro economic asymmetries and common-poool overdraft in transboundary aquifers Water Resources Research. Paper

K Doudrick, J Kim, K Roche and D Bolster The Impact of Biofilms and Dissolved Organic Matter on the Transport of Nanoparticles in Field-Scale Streams Water Research. Paper

L Xing, D Bolster, H Liu, T Sherman, DH Richter, K Rocha-Brownell and Z Ru Markovian Models for Microplastic Transport in Open-Channel Flows Water Resources Research. Paper

M Alifa, S Castruccio, D Bolster, M Bravo, P Crippa Information entropy tradeoffs for efficient uncertainty reduction in estimates of air pollution mortality Environmental Research. Paper

A Kryston, MF Müller, G Penny, D Bolster, J L Tank, MS Mondal Addressing climate uncertainty and incomplete information in transboundary river treaties: A scenario-neutral dimensionality reduction approach Journal of Hydrology. Paper

C Talbot, D Bolster, D Medvigy and S Jones A terrestrial-aquatic model reveals cross-scale interactions regulate lateral dissolved organic carbon transport from terrestrial ecosystems Journal of Geophysical Research Biogeosciences. Paper

G Penny, D Bolster and M Muller Social dilemmas and poor water quality in private water systems Hydrology and Earth System Sciences. Paper

MJ Schmidt, NB Engdahl, DA Benson and D Bolster Optimal time step length for Lagrangian, interacting-particle simulations of diffusive mixing Transport in Porous Media. Paper

G Sole-Mari, D Bolster & DA Fernandez-Garcia A closer look: High-resolution pore-scale simulations of solute transport and mixing through porous media columns. Transport in Porous Media. Paper

S Speir, L Shang, D Bolster, JL Tank, CJ Stoffel, DM Wood, BW Peters, N Wei, and D Wang. Solutions to current challenges in widespread monitoring of groundwater quality via crowdsensing. Groundwater , 60, 15-24. Paper

T Sherman G Sole-Mari, J Hyman, MR Sweeney, D Vassallo and D Bolster Characterizing reactive transport behavior in a three dimensional discrete fracture network Transport in Porous Media. Paper

JL Woodruff, JC Dietrich, D Wiraset, AB Kennedy, D Bolster, Z Silver, SD MEdlin and RL Kolar Subgrid corrections in finite-element modeling of storm-driven coastal flooding Ocean Modeling. Paper

P Crippa, M Alifa, D Bolster, MG Genton and S Castruccio A temporal model for vertical extrapolation of wind speed and wind energy assessment Applied Energy. Paper

A Begmohammadi, D Wiraset, Z Silver, D Bolster, AB Kennedy and JC Dietrich Subgrid Surface Connectivity for Storm Surge Modeling Advances in Water Resources. Paper

ZJ Hanson, JA Zwart, SE Jones, AF Hamlet Projected changes of regional lake hydrologic characteristics in response to 21st century climate change Inland Waters. Paper

A Foster, AC Trautz, D Bolster, T Illangasekare and K Singha Effect of large-scale heterogeneity and temporally varying hydrologic processes on estimating immobile pore space: A mesoscale-laboratory experimental and numerical modeling investigation Journal of Contaminant Hydrology. Paper

DA Benson, D Bolster, S Pankavich and MJ Schmidt Nonparametric, data-based kernel interpolation for particle-tracking simulations and kernel density estimation Advances in Water Resources. Paper

G Sole-Mari, MJ Schmidt, D Bolster and D Fernandez-Garcia Random-Walk Modeling of Reactive Transport in Porous Media with a Reduced-order Chemical Basis of Conservative Components Water Resources Research. Paper

A Weaver, D Bolster, C Madukoma, A Mattingly, N Morales-Soto and J Shrout Transient surface hydration impacts biogeography and intercellular interactions of non-motile bacteria Applied and Environmental Microbiology. Paper

EE Wright, NL Sund, DH Richter, GM Porta and D Bolster Upscaling bimolecular reactive transport in highly heterogeneous porous media with the LAgrangian Transport Eulerian Reactions Spatial (LATERS) Markov model Stochastic Environmental Research and Risk Assessment. Paper

T Sherman, N Engdahl, G Porta and D Bolster A Review of Spatial Markov Models for predicting pre-asymptotic and anomalous transport in porous and fractured media Journal of Contaminant Hydrology. Paper

EB Janetti, T Sherman, GR Guedon, D Bolster and G Porta Upscaling of solute plumes in periodic porous media through a trajectory based spatial Markov model Water Resources Research. Paper

HJ Park, T Sherman, LS Freire, G Wang, D Bolster, P Xian, A Sorooshian, J Reid and DH Richter Predicting vertical concentration profiles in the marine atmospheric boundary layer with a Markov chain random walk Journal of Geophysical Research – Atmospheres. Paper

G Penny, C Mullen, D Bolster, B Huber and M Muller anem: A simple web-based platform to build stakeholder understanding of groundwater behavior Groundwater. Paper

A Begmohammadi, R Haghani-Hassan-Abadi, A Fakhari and D Bolster Study of phase-field lattice Boltzmann models based on the conservative Allen-Cahn equation Physical Review E. Paper

M Alifa, D Bolster, MI Mead, MT Latif and P Crippa The influence of meteorlogy and emissions on the spatio-temporal variability of PM10 in Malaysia Atmospheric Research, 246, 105107. Paper

WP Johnson, A Rasmuson, C Ron, B Erickson, K VanNess, D Bolster and B Peteres Aninion nanoparticle and microplastic non-exponential distributions from source scale with grain size in environmental granular media Water Research, 182, 116012. Paper

G Sole-Mari, D Fernandez-Garcia, X Sanchez-Vila and D Bolster Lagrangian modeling of mixing-limited reactive transport in porous media: multi-rate interaction by exchange with the mean Water Resources Research, Accepted. Paper

MJ Schmidt, SD Pankavich, A Navarre-Sitchler, NB Engdahl, D Bolster and DA Benson Reactive Particle-trackig Solutions to a Benchmark Problem on Heavy Metal Cycling in Lake Sediments Journal of Contaminant Hydrology, Accepted. Paper

MJ Schmidt, N Engdahl, S Pankavich and D Bolster A mass-transfer particle-tracking method for simulating transport with discontinuous diffusion Advances in Water Resources, Accepted. Paper

T Sherman, EB Janetti, G Guedon, G Porta and D Bolster Uscaling transport of a sorbing solute in diordered non periodic porous domains Advances in Water Resources, Accpted. Paper

G Penny, MS Mondal, S Biswas, D Bolster, J Tank and M Muller Using natural experiments and counterfactuals for causal assessment: River salinity and the Ganges water agreement Water Resources Research, Accepted. Paper

N Engdahl and D Bolster Markovian transport processes in a heterogeneous, variably saturated watershed: A multi-domain spatial Markov model Advances in Water Resources, Accepted. Paper

KR Roche, M Muller-Itten , DN Dalle, D Bolster and MF Muller Climate Change and the Opportunity Cost of Conflict Proceedings of the National Academy of Science, 201914829. Paper

T Sherman, J Hyman, M Dentz and D Bolster Characterizing the Influence of Fractuor Denisty of Network Scale Transport Journal of Geophysical Research: Solid Earth. Paper

L Sun, H Qui, J Niu, BX Hu, JF Kelly, D Bolster and MS Phanikumar Comparison of negative skewed space fractional models with time nonlocal approaches for stream solute transport modeling Journal of HYdrology, 582, 124504. Paper

Riis T, Tank J, Reisinger A, Aubenau A, Roche K, Levi P, Baattrup-Pedersen A, Alnoee A, and Bolster D. Riverine macrophytes control seasonal nutrient uptake via both physical and biological pathways Freshwater Biology, 65, 178-192. Paper

AJ Shogren, JL Tank, BR Hanrahan and D Bolster Controls on particle retention using experimental streams Freshwater Science, 39. Paper

J Kim, KR Roche, AJ Shogren, J Sticha, D Bolster and K Doudrick Transport of Food- and Catalytic-Grade Titanium Dioxide nanopartilces in controlled field streams with varying streambed and biofilm conditions. Environmental Science: Nano, 6, 3454-3466. Paper

A Kennedy, D Wiraset, A Begmohammadi, T Sherman, D Bolster and JC Dietrich Subgrid Theory for Storm Surge Modelling Ocean Modelling, 144, 101491. Paper

D Bolster, K Roche and V Morales Recent advances in anomalous trabsport models for predicting contaminant in natural groundwater systems Current Opinion in Chemical Engineering, 26, 72-80. Paper

DA Benson, MJ Schmidt, D Bolster, C Harmon, NB Engdahl Aging and mixing as pseudo-chemical-reactions between, and on, particles: Perspective on particle interaction and multi-modal ages in hillslopes and streams Advances in Water Resources, 132, 103386. Paper

JA Zwart, ZJ Hanson, JS Read, MN Fiene, AF Hamlet, D Bolster and SE Jones Cross-scale interactions dictate regiona lake carbon flux and productivity response to future climate Geophysical Research Letters, 46, 8840-8851. Paper

G Sole-Mari, D Bolster, D Fernandez-Garcia and X Sanchez-Vila Particle density estimation with grid-projected and boundary-corrected adaptive kernels Advances in Water Resources, 131, 103386. Paper

Zhao, Benzhong, Christopher W. MacMinn, Bauyrzhan K. Primkulov, Yu Chen, Albert J. Valocchi, Jianlin Zhao, Qinjun Kang et al. “Comprehensive comparison of pore-scale models for multiphase flow in porous media.” Proceedings of the National Academy of Sciences (2019): 201901619. Paper

G Ceriotti, A Russian, D Bolster and G Porta A double-continuum transport model for segregated porous media: derivation and sensitivity analysis-driven calibration Advances in Water Resources, 128, 206-217. Paper

AJ Shogren, JL Tank, EJ Rosi, MM Dee, SL Speir, D Bolster an SP Egan Transport and instream removal of the Cry1ab protein from genetically engineered maize is mediated by biofilms in experimental streams PLOS ONE, 14, e0216481. Paper

AJ Shogren, JL Tank, SP Egan D Bolster and T Riis Riverine distribution of mussel eDNA reflects a balance among density transport and removal processes Freshwater Biology, 64, 1467-1479. Paper

KR Roche, A Li, D Bolster, GJ Wagner and AI Packman Effects of turbulent hyporheic mixing on reach-scale transport Water Resources Research, 55, 3780-3795. Paper

A Li, AF Aubeneau, T King, RM Cory, BT Neilson, D Bolster and AI Packman Effects of vertical hydrodynamic mixing on photomineralization of dissolved organic carbon in Arctic surface waters Environmental Science: Processes & Impacts, 21, 748. Paper

S Most, D Bolster, B Bijeljiv and W Nowak Training Trajectories as Training Images to Simulate Advective-Diffusive, Non-Fickian Transport Water Resources Research, 55, 3465-3480. Paper

K Roche, AJ Shogren, AF Aubeneau, J Tank and D Bolster Modeling benthic vs. hyporheic nutrient uptake in unshaded streams with varying substrates Journal of Geophysical Research: Biogeosciences, 124, 367-383. Paper

MM Rahman, G Penny, MS Mondal, M Zaman, A Kryston, M Salehin, Q Nahar, MS Islam, D Bolster, JL Tank and MF Muller Salinization in large river deltas: Drivers, Impacts and socio-hydrologic feedbacks Water Security, 6, 100024. Paper

J Sandoval, E Mignot, L Mao, P Pasten, D Bolster and C Escauriaza Field and numerical investigation of transport mechanisms in a surface storage zone. Journal of Geophysical Research – Earth Surface, 124, 938-959. Paper

T Sherman, A Paster, G Porta, D Bolster A spatial Markov model for upscaling transport of adsorbing-desorbing solutes Journal of Contaminant Hydrology, 22,31-40. Paper

T Sherman, JD Hyman, D Bolster, N Makedonska, G Srinivasan Characterizing the impact of particle behaviors at fracture intersection in three-dimensional discrete fracture networks Physical Review E, 99, 013110. Paper

T Sherman, KR ROche, DH Richter, AI Packman and D Bolster A dual domain stochastic Lagrangian model for predicting transport in open channels with hyporheic exchange Advances in Water Resources, 125, 57-67. Paper

E Wright, NL Sund, DH Richter, GM Porta and D Bolster Upscaling Mixing in Highly Heterogeneous Porous Media via a Spatial Markov Model Water, Accepted. Paper

AJ Valocchi, D Bolster and C Werth Mixing Limited Reactions in Porous Media Transport in Porous Media, Accepted. Paper

D Triadis, F Jiang and D Bolster Anomalous dispersion in pore-scale simulations of two-phase flow Transport in Porous Media, Accepted. Paper

DA Benson, S Pankavich and D Bolster On the separate treatment of mixing and spreading by the reactive particle tracking algorithm: An example of accurate upscaling of reactive Poiseuille flow Advances in Water Resources, 123, 40-53. Paper

A Fakhari, M Geier and D Bolster A simple phase-field model for interface tracking in three dimensions Computers and Mathematics with Applications, 78, 1154-1165. Paper

T Sherman, A Foster, D Bolster and K Singha Predicting downstream concentration histories from upstream data in column experiments Water Resources Research, 54, 9684-9694. Paper

Z Hanson , JA Zwart, J Vanderwall, CT Solomon, S Jones, A Hamlet and D Bolster Integrated, Regional-Scale Hydrologic Modeling of Inland Lakes Journal of American Water Resources Association, 54,1302-1324. Paper

AJ Shogren, JL Tank, SP Egan, O August, EJ Rosi, BR Hanrahan, MA Renshaw, CA Gantz, D Bolster Water flow and biofilm coverage influence environmental DNA (eDNA) detection in recirculating streams Environmental Science and Technology, 52, 8530-8537. Paper

BR Hanrahan, JL Tank, A Aubeneau and D Bolster Substrate-specific biofilms control nutrient uptake in experimental streams Freshwater Science, 37, 456-471. Paper

JA Zwart, ZJ Hanson, J Vanderwall, D Bolster, A Hamlet and S Jones Spatially explicit regional-scale simulation of lake carbon fluxes Global Biogeochemical Cycles, 32, 1276-1293. Paper

A Fakhari, Y Li, D Bolster and KT Christensen A phase-field lattice Boltzmann model for simulating multiphase flows in porous media: Application and comparison to experiments of CO2 sequestration at pore scale Advances in Water Resources, 114, 119-134. Paper

FDAA Reis, D Bolster and VR Voller Anomalous behaviors during infiltration into heterogeneous porous media Advances in water Resources, 113, 180-188. Paper

T Sherman, A Fakhari, S Miller, K Singha and D Bolster Parameterizing the Spatial Markov Model from Breakthrough Curve Data Alone Water Resources Research, 53, 10888-10898. Paper

D Ding, DA Benson, D Fernandez-Garcia, CV Henri, DW Hyndman, MS Phanikumar, D Bolster Elimination of the reaction rate “scale effect”: Lagrangian reactive particle-tracking method to simulate mixing-limited, field-scale biodegradation at the Schoolcraft (MI,USA) site. Water Resources Research, 53, 10411-10432. Paper

EE Wright, DH Richter and D Bolster Effects of incomplete mixing on reactive transport in flows through heterogeneous porous media Physical Review Fluids, 2, 114501. Paper

A Fakhari, T Mitchell, C Leonardi and D Bolster Improved locality of the phase-field Lattice-Boltzmann model for immiscible fluids at high density ratios Physical Review E, 96, 053301. Paper

T Aquino, KR Roche, A Aubeneau, AI PAckman and D Bolster A Process-Based Model for Bioturbation-Induced Mixing Nature Scientific Reports, 7, 14287. Paper

N Sund, G Porta, D Bolster and R Parashar A Lagrangian transport Eulerian reaction spatial (LATERS) Markov model for prediction of effective bimolecular reactive transport Water Resources Research, Accepted. Paper

A Li, AAubeneau, D Bolster, J Tank and A Packman Covariation in patterns of turbulence-driven hyporheic flow and denitrification enhances reach-scale nitrogen removal Water Resources Research, 53, 6927-6944. Paper

T Aquino and D Bolster Localized Point Mixing Rate Potential in Heterogeneous Velocity Fields Transport in Porous Media, 119, 391-402. Paper

A Shogren, J Tank, E Andruszkiewicz, B Olds, A Mahon, C Jerde and D Bolster Controls on eDNA movement in streams: Transport, Retention and Resuspension Nature Scientific Reports, 7, 5065. Paper

D Bolster, DA Benson and K Singha Upscaling Chemical Reactions in Multicontinuum Systems – when might time fractional equations work? Chaos, Fractals and Solitons, 102, 414-425. Paper

JJ Gómez-Hernández, JJ Butler, A Fiori, D Bolster, V Cvetkovic, G Dagan and D Hyndman , Introduction to special section on Modeling highly heterogeneous aquifers: Lessons learned in the last 30 years from the MADE experiments and others, Water Resour. Res., 53, 2581–2584,. Paper

A Fakhari, D Bolster and L Luo A weighted multiple-relaxation time lattice Boltzmann method for multiphase flows and its application to partial coalescence cascades Journal of Computational Physics, 341, 22-43. Paper

N Engdahl, DA Benson and D Bolster Lagrangian simulation of mixing and reactions in complex geochemical systems Water Resources Research, 53, 3513-3522. Paper

T Aquino, A Aubeneau, G McGrath, D Bolster and S Rao Noise-Drive Statistics: Scaling and Truncation in Stochastic Storage Processes Nature Scientific Reports, 7, 302. Paper

J Kelly, D Bolster, MM Meerschaert, JD Drummond and AI Packman FracFit : A robust parameter estimation tool for fractional calculus models Water Resources Research, 53, 2559-2567. Paper

NL Sund, G Porta and D Bolster Upscaling of dilution and mixing using a trajectory based Spatial Markov model in a periodic flow domain Advances in Water Resources, 103, 76-85. Paper

A Fakhari and D Bolster Diffuse interface modeling of three-phase contact line dynamics on curved boundaries: A lattice Boltzmann model for large density and viscosity ratios Journal of Computational Physics, 334, 620-638. Paper

DA Benson, T Aquino, D Bolster, N Engdahl, C Henri and D Fernandez-Garcia A comparison of Eulerian and Lagrangian transport and nonlinear reaction algorithms Advances in Water Resources, 99, 15-37. Paper

C Gonzalez, D Richter, D Bolster, J Calantoni, S Bateman and C Escuariaza Characterization of bedload intermittency near the threshold of motion using a Lagrangian sediment transport model Environmental Fluid Mechanics, 17,111-137. Paper

DA Benson and D Bolster Arbitrarily Complex Chemical Reactions on Particles Water Resources Research, 52, 9190-9200. Paper

N Sund, D Bolster and DA Benson Testing the limits of the Spatial Markov model for upscaling transport: the role of non-monotonic effective velocity correlations Physical Review E, 94, 043107. Paper

KR Roche, AF Aubeneau, M Xie, T Aquino, D Bolster and AI Packman An integrated experimental and modeling approach to predict sediment mixing from benthic burrowing behavior Environmental Science & Technology, 50, 10047-10054. Paper

T Duster, C Na, D Bolster and J Fein Transport of Single-Layered Graphene Oxide Nanosheets through Quartz and Iron Oxide coated Sand Columns Journal of Environmental Engineering, 04016079. Paper

CL Jerde, BP Olds, AJ Shogren, EA Andruszkiewicz, AR Mahon, D Bolster and JL Tank The influence of stream bottom substrate on the retention and transport of vertebrate environmental DNA Environmental Science & Technology, 50, 8770-8779, DOI:. Paper

AF Aubeneau, B Hanrahan, D Bolster J Tank Biofilm growth in gravel bed streams controls solute residence time distributions. Journal of Geophysical Research: Biogeosciences , 121, doi:. Paper

AJ Shogren, JL Tank, EA Andruszkiewicz, B Olds, B., C Jerde and D Bolster Modelling the transport of environmental DNA through a porous substrate using continuous flow-through column experiments. Journal of The Royal Society Interface, 13(119), p.20160290. Paper

D Bolster, A Paster and DA Benson A particle number conserving Lagrangian method for mixing-driven reactive transport Water Resources Research, 2016, 52,1518-1527. Paper

C Hunter, J Gironas, D Bolster and CA Karavatis A Dynamic, Multivariate Sustainability Measure for Robust Analysis of Water Management under Climate and Demand Uncertainty in an Arid Environment Water, 2015, 5928-558. Paper

NL Sund, D Bolster and C Dawson Upscaling transport of a reacting solute through a periodically converging-diverging channel at pre-asymptotic times Journal of Contaminant Hydrology, 182,1-15. Paper

Martyn P. Clark, Ying Fan, David M. Lawrence, Jennifer C. Adam, Diogo Bolster, David J. Gochis, Richard P. Hooper, Mukesh Kumar, L. Ruby Leung, D. Scott Mackay, Reed M. Maxwell, Chaopeng Shen, Sean C. Swenson, and Xubin Zeng Improving the representation of hydrologic processes in Earth System Models Water Resources Research, 51, 5929-5956. Paper

A Paster, T Aquino and D Bolster Incomplete Mixing and Reactions in a Laminar Shear Flow Physical Review E, 92, 012922. Paper

A Aubeneau, R Martin, D Bolster, R Schumer, D Jerolmack and A Packman Fractal Patterns in Riverbed Morphology produce fractal scaling of water storage times Geophysical Research Letters, 42, 5309-5315. Paper

N Sund, D Bolster, S Mattis and C Dawson Pre-asymptotic Transport Upscaling in Inertial and Unsteady Flows Through Porous Media Transport in Porous Media, 109, 411-432. Paper

T Aquino, A Aubeneua and D Bolster Peak and Tail Scaling of Breakthrough Curves in Hydrologic Tracer Tests Advances in Water Resources, 78,1-8. Paper

T Aquino, D Bolster and A Nunes Characterization of the Endemic Equilibrium and Response to Mutant Injection in a Multi-strain Disease Model Journal of Theoretical Biology, 368,27-36. Paper

X Fu, L Cueto-Felgueroso, D Bolster and R Juanes Rock dissolution patterns and geochemical shutdown of CO2-brine-carbonate reactions during convective mixing in porous media Journal of Fluid Mechanics, 764,296-315. Paper

AF Aubeneau, B Hanrahan, D Bolster and JL Tank Substrate Size and Heterogeneity control Anomalous Transport in Small Streams Geophysical Research Letters , 41, 8335-8341. Paper

AF Aubeneau, JD Drummond, R Schumer, D Bolster, JL Tank and AI Packman Effects of benthic and hyporheic reactive transport on breakthrough curves Freshwater Science , 34, 301-315. Paper

DP McInnis, D Bolster and PA Maurice Mobility of Dissolved Organic Matter from the Suwannee River (Georgia, USA) in Sand Packed Columns Environmental Engineering Science, 32, 4-13. Paper

N Engdahl, D Bolster and DA Benson Predicting the Enhancement of Mixing-Driven Reactions in Nonuniform Flows using Measures of Flow Topology Physical Review E (Rapid) , 90,051001. Paper

KJ Martin, D Bolster, N Derlon, E Morgenroth and R Nerenberg Effect of fouling layer spatial distribution on permeate flux: A theoretical and experimental study Journal of Membrane Science, 471, 130-137. Paper

MA Roes, D Bolster and MR Flynn Buoyant convection from a discrete source in a leaky porous medium Journal of Fluid Mechanics, 755, 204-229. Paper

D Bolster, Y Meheust, T Le Borgne, J Bouquain, P Davy Modeling Preasymptotic Transport in Flow with Significant Inertial and Trapping effects – the importance of velocity correlations and a Spatial Markov Model Advances in Water Resources, 70, 89-103. Paper

RE Honey, R Hershberger, RJ Donnelly, D Bolster Oscillating-grid experiments in water and superfluid helium Physical Review E, 89, 053016. Paper

A Paster, D Bolster and DA Benson Connecting the Dots: Semi-Analytical and Random Walk Numerical Solutions of the Diffusion-Reaction Equation with Stochastic Initial Conditions Journal of Computational Physics, Volume 263 , 15 April 2014, Pages 91–112. Paper

D Pedretti, D Fernandez-Garcia, X Sanchez-Vila, D Bolster and DA Benson Apparent directional mass-transfer capacity coefficients in three-dimensional anisotropic heterogeneous aquifers under radial convergent transport Water Resources Research, 50, 1205-1224. Paper

DP McInnis, D Bolster & PA Maurice Natural Organic Matter Transport Modeling with a Continuous Time Random Walk Environmental Engineering Science, 31, 98-106. Paper

D Bolster The Fluid Mechanics of Dissolution Trapping in geologic Storage of CO2 Journal of Fluid Mechanics (Focus on Fluids), Volume 740 / February 2014, pp 1 – 4. Paper

C Rodak, SE Silliman and D Bolster Time-dependent health risk from contaminated groundwater including use of Reliability, Resilience and Vulnerabliity as measures, Journal of American Water Resources Association, 50, 14-28. Paper

B Schneider, A Paster and D Bolster A Numerical Investigation of Mixing and Spreading across an angled Interface, Advances in Water Resources, 62, P 280-291. Paper

D Pedretti, D Fernandez-Garcia, D Bolster and X Sanchez-Vila On the formation of breakthrough curves tailing during convergent flow tracer tests in three-dimensional heterogeneous aquifers Water Resources Research, 49, 4157-4173. Paper

P De Anna, T Le Borgne, M Dentz, AM Tartakovsky, D Bolster and P Davy Flow Intermittency, Dispersion, and Correlated Continuous Time Random Walks in Porous Media Physical Review Letters, 110, 184502,. Paper

PC Kerr, MN Gooseff and D Bolster The Significance of Model Structure in One-Dimensional Stream Solute Transport Models with Multiple Transient Storage Zones – Competing vs. Nested Arrangements Journal of Hydrology, 497, 133-144. Paper

DA Benson, D Bolster & A Paster Full solution of the annihilation reaction A + B → ∅ based on time-subordination Journal of Chemical Physics, 138, 131101 (2013),. Paper

F de Barros, D Fernandez-Garcia, D Bolster and X Sanchez-Vila A risk-based probabilistic framework to estimate the end-point of remediation: Concentration rebound by rate-limited mass transfer Water Resources Research, DOI:. Paper

LA Seders Dietrich, DP McInnis, D Bolster and PA Maurice Effect of polydispersivity on natural organic matter transport Water Research, 47, 2231-2240. Paper

D Bolster, DA Benson, B Bauemer, MM Meerschaert Mixing-Driven Equilibrium Reactions in Multidimensional Fractional Advection Dispersion Systems Physica A, 391, 4754-4660. Paper

V Vilarrasa, j Carrera, D Bolster and M Dentz Semianayltical solution for CO2 plume shape and pressure evolution during CO2 injection in deep saline formations Transport in Porous Media, 97, 43-65. Paper

A Paster, D Bolster and DA Benson Particle Tracking and the Diffusion-Reaction Equation Water Resources Research, 49, 1-6, DOI:. Paper

Dong Ding, David A. Benson, Amir Paster, Diogo Bolster Modeling Bimolecular Reactions and Transport in Porous Media Via Particle Tracking Advaces in Water Resources, Volume 53, March 2013, Pages 56-65. Paper

J Bouquain, Y Meheust, D Bolster & P Davy The Impact of Inertial effects on Solute Dispersion in a Channel with Periodically Varying Aperture, Physics of Fluids, 24, 083602. Paper

D Bolster, MM Meerschaert & A Sikorski i Product Rule for Vector Fractional Derivatives, Fractional Calculus & Applied Analysis, Vol 15, P 463-478. Paper

A Paster & D Bolster The effect of initial spatial correlations on late time kinetics of bimolecular irreversible reactions, Physica A, Vol 391, P 4654-4660. Paper

D Pedretti, M Barahona-Palomo, D Bolster, X Sanchez-Vilaa, D Fernandez-Garcia A quick and inexpensive method to quantify spatially variable infiltration capacity for artificial recharge ponds using photographic images, Journal of Hydrology, Vol 430–431, Pages 118-126. Paper

E Castro, D fernandez-Garcia, J Carrera and D Bolster Visualization of mixing processes in a heterogeneous sand box aquifer, Environmental Science and Technology, 46 (6), pp 3228–3235. Paper

D Bolster and M Dentz Anomalous Dispersion in Chemically Heterogeneous Media induced by Long Range Correlations, Journal of Fluid Mechanics, Volume 695, pp 366 – 389. Paper

A.M. Tartakovsky, P. de Anna, T Le Borgne, A Balter and D Bolster Effect of spatial concentration fluctuations on effective kinetics in diffusion-reaction systems, Water Resources Research, 48, W02526, doi:. Paper

D. Bolster, P. de Anna, D.A. Benson and A.M. Tartakovsky Incomplete Mixing and Reactions with Fractional Dispersion, Advances in Water Resources, 37 (2012) 86–93. Paper

A. Jurado, F. De Gaspari, V. Vilarrasa, D. Bolster, X. Sanchez-Vila, D. Fernandez-Garcia, E. Vazquez-Sune, D. M. Tartakovsky Probabilistic analysis of groundwater-related risks at subsurface excavation sites, Engineering Geology 125 (2012) 35–44,doi:. Paper

T. Le Borgne, D. Bolster, M. Dentz, P. de Anna and A. Tartakovsky , Effective Pore-Scale Dispersion Upscaling with a Correlated CTRW Approach Water Resources Research, 47, W12538, doi:. Paper

D Fernandez-Garcia, D Bolster, X Sanchez-Vila and DM Tartakovsky A Bayesian Approach to Integrate Time Data into Probabilistic Risk Analysis of Remediation Efforts in NAPL-Polluted Sites Advances in Water Resources, Vol 36, P 108-120. Paper

D Pedretti, M Barahona-Palomo, D Bolster, D Fernandez-Garcia, X Sanchez-Vila and DM Tartakovsky Probabilistic Analysis of Maintenance and operation of Artificial Recharge Ponds Advances in Water Resources, Vol 36, P 23-35. Paper

Pietro de Anna, Tanguy Le Borgne, Marco Dentz, Diogo Bolster, and Philippe Davy Anomalous Kinetics in Diffusion Limited Reactions Linked to Non-Gaussian Concentration PDF Journal of Chemical Physics, 135, 174104 (2011); doi:. Paper

D Bolster, R Herschberger and RJ Donnelly Dynamic Similarity, the Dimensionless Science (selected for translation to Japanese by Japanese Physics Society) Physics Today, Volume 64, Issue 9, P 42-47. Paper

D Bolster, M Dentz and T Le Borgne Hyper Mixing in Shear Flow Sites Water Resources Research, Water Resour. Res., 47, W09602, doi:. Paper

T Le Borgne, M Dentz, P, D Bolster, J Carrera, JR de Dreuzy and O Bour Persistence of incomplete mixing: A key to anomalous transport Physical Review E, 84, 015301(R). Paper

D Pedretti,D Fernandez-Garcia, X Sanchez-Vila, M Barahona-Palomo, D Bolster Combining physical-based models and satellite images for the spatio-temporal assessment of soil infiltration capacity Stochastic Environmental Research and Risk Assesment, Volume 25, Number 8, Pages 1065-1075. Paper

FPJ de Barros, D Bolster, X Sanchez-Vila and W Nowak A Divide and Conquer Approach to Cope with Uncertainty, Human Health Risk and Decision Making in Contaminant Hydrology Water Resources Research, VOL. 47, W05508, 13 PP., 2011 doi:. Paper

D Bolster, R Herschberger and RJ Donnelly An appreciation of the 1939 paper “On an experimentally observed phenomenon on vortex rings …”by Carl-Heinz Krutzsch Annalen der Physik, Volume 523, Issue 5, pages 380–382, May. Paper

D Bolster, R Herschberger and RJ Donnelly Translation of the 1939 paper “On an experimentally observed phenomenon on vortex rings …”by Carl-Heinz Krutzsch Annalen der Physik, Volume 523, Issue 5, pages 360–379, May. Paper

D Bolster, I Neuweiler, M Dentz, J Carrera The Impact of Buoyancy on Front Spreading in Heterogeneous Porous Media in Two-Phase Immiscible Flow Water Resources Research, 47, W02508, doi:. Paper

T Branigan, D Bolster, BYS Vazquez, M Intaglietta, DM Tartakovsky Mean arterial pressure nonlinearity in an elastic circulatory system subjected to different hematocrits Biomech Model Mechanobiol vol. 10, no. 4,doi:10.1007/s10237-010-0258-y, 591-598,. Paper

D. Bolster, F.J. Valdes-Parada, T. Le Borgne, M. Dentz and J.Carrera Mixing in Confined Stratified Aquifers Journal of Contaminant Hydrology, doi: 10.1016/j.jconhyd.2010.02.003, Volumes 120-121, Pages 198-212. Paper

M Dentz, D Bolste r Distribution- versus correlation-induced anomalous transport in quenched random velocity fields Physical Review Letters, 105, 244301. Paper

T Le Borgne, M Dentz, D Bolster, J Carrera, J-R de Dreuzy and P Davy Non-Fickian mixing: temporal evolution of the scalar dissipation rate in porous media Advances in Water Resources, doi:10.1016/j.advwatres.2010.08.006, Vol 33(12), P1468-1475. Paper

RE Hershberger, D Bolster and RJ Donnelly Slowing of vortex rings by development of Kelvin waves Physical Review E, 82, 036309. Paper

D Bolster, DA Benson, T LeBorgne and M Dentz Anomalous mixing and reaction induced by superdiffusive nonlocal transport Physical Review E, 82, 021119. Paper

V Vilarrasa, D Bolster, S Olivella, J Carrera Coupled Hydromechanical Modeling of CO2 Sequestration in Deep Saline Aquifers International Journal of Greenhouse Gas Control, Vol 4(6), P 910-919. Paper

V Vilarrasa, D Bolster, M Dentz, S Olivella, J Carrera Effects of CO2 Compressibility on CO2 Storage in Deep Saline Aquifers Transport in Porous Media, DOI: 10.1007/s11242-010-9582-z, Vol 85(2), P 619-639. Paper

D. Bolster, R.E. Hershberger and RJ Donnelly Oscillating pendulum decay: Vortex ring induced drag, Physical Review E, 81, 046317, DOI:. Paper

Benjamin Maurer, Diogo Bolster and Paul F Linden Intrusive gravity currents between two stably stratified fluids Journal of Fluid Mechanics, doi:10.1017/S0022112009993752, Volume 647, P 53-69. Paper

Xavier Sanchez-Vila, Diogo Bolster An Analytical Approach to Transient Homovalent Cation Exchange Problems Journal of Hydrology, Volume 378, Issues 3-4, 30 November 2009, Pages 281-289. Paper

Marco Dentz, Jesus Carrera, Diogo Bolster, Tanguy Le Borgne Multipoint concentration statistics for transport in stratified random velocity fields Physical Review E 80, 036306. Paper

Donado LD, Sanchez-Vila X, Dentz M, Carrera J and Bolster D ‘Multi-component reactive transport in multi-continuum media’ Water Resources Research, 45, W11402, doi:. Paper

Dentz Marco, Bolster Diogo and Le Borgne Tanguy (2009) ‘Concentration statistics for transport in random media’ Physical Review E 80, 010101. Paper

Bolster D, LeBorgne T and Dentz M (2009) ‘Solute dispersion in channels with periodically varying apertures’ Physics of Fluids, 21, 056601. Paper

Bolster D., Barahona , Dentz M., Fernandez Garcia D., Sanchez-Vila X., Trichero P, Volhondo C, Tartakovsky DM (2009) “Probabilistic Risk Assessment applied to contamination scenarios in porous media” Water Resources Research, 45, W06413, doi:. Paper

Bolster D., Dentz M., Carrera J (2009) “Effective Two-Phase flow in heterogeneous media under temporal pressure fluctuations” Water Resources Research, 45, W05408, doi:. Paper

Bolster D., Linden P.F. (2009) ” Particle Transport in Low Energy Ventilation Systems. Part 2: Transients and Experiments “ Indoor Air , 19, 130-144. Paper

Bolster D., Linden P.F. (2009) ” Particle Transport in Low Energy Ventilation Systems. Part 1: Theory of Steady States “ Indoor Air , 19, 122-129. Paper

A. M. Tartakovsky, D. Bolster, and D. M. Tartakovsky (2009) “Identification of Layered Structures of the Vadose Zone from Electrical Resistivity Surveys” Vadose Journal , 7, 1253. Paper

Tijera M., Cano J.L., Redondo J.M. and Bolster D. (2008) “Filtered Deterministic Waves and Analysis of the Fractal Dimension of wind velocity components” Nuovo Cimento C, 31, 653-667. Paper

Bolster D., Linden P.F. (2008) “Transients in natural ventilation – Sudden Changes in Heat Loading” Energy and Buildings Vol 20, 2099-2110. Paper

Bolster D., Tartakovsky D.M. (2008) “Probabilistic Risk Analysis of Contamination in Buildings” Indoor Air Vol 18, 351-356. Paper

Sullivan IS, Niemela JJ, Hershberger R, Bolster D, Donnelly RJ (2008) “Dynamics of Thin Vortex Rings” Journal of Fluid Mechanics – Vol 609, 319-347. Paper

Bolster D., Caulfield C.P. (2008) “Transients in natural ventilation – A time-periodically-varying source” Building Services Engineering Research and Technnology – Vol 29, 119-135. Paper

Bolster D., Hang A., Linden P.F. (2008) “The Front Speed of an Intrusive Gravity Current into a Continuously Stratified Me- dium”, Journal of Fluid Mechanics – Vol 594, 369 – 377. Paper

Bolster D., Linden P.F. (2007) “Contaminants in Ventilated Filling Boxes” Journal of Fluid Mechanics – Vol. 591 , 97 – 116. Paper

Bolster D., Tartakovsky D.M., Dentz, M. (2007) “Analytical Models of Contaminant Transport in Coastal Aquifers” Advances in Water Resources, Vol 30(9) P.1962-1972. Paper